#Firstglance jmol mac os#

The target moiety (a chain, a range of residues in a chain, a residue or group, or a single atom) is selected beforehand by clicking on it.ДЄnti-Alzheimer's drug interaction with acetylcholinesterase ( 1gpk cf. Non-covalent interactions ( hydrogen bonds, salt bridges, hydrophobic interactions) with any designated target moiety are displayed automatically in a powerful Contacts dialog in FirstGlance in Jmol. Any residue or sequence number can be found/located in the Find dialog. Any moiety can be hidden by clicking on it in Hide mode. In order to be as easy as possible to use, FirstGlance in Jmol does not provide tools to customize the molecular view, but rather offers a series of 'canned' views that reveal the major structural features of the molecule, such as composition (protein, DNA, RNA, ligand and solvent) secondary structure, amino and carboxy termini, hydrophobic and polar surfaces, surface charges, salt bridges and cation-pi interactions. Tooltips are used extensively, and explanatory help, with color keys, appears automatically for each view. It operates from menus and forms - no familiarity with the Jmol command scripting language is required.

#Firstglance jmol mac os#

It works in the most popular web browsers, and MS Windows, Apple Mac OS X, and linux. It uses free open-source Jmol, as does Proteopedia. When you go directly to FirstGlance in Jmol, you can enter any PDB code, or upload a PDB file from your computer, such as a prediction by AlphaFold or a homology model.ДЇirstGlance in Jmol ( ) is a free, open-source, macromolecular visualization software package that operates on-line in a web browser. Every molecule in Proteopedia can be explored in FirstGlance in Jmol, using the link beneath the molecule (on pages titled with a PDB code, such as 1d66).